Research Article: Genetic Heterogeneity in Algerian Human Populations

Date Published: September 24, 2015

Publisher: Public Library of Science

Author(s): Asmahan Bekada, Lara R. Arauna, Tahria Deba, Francesc Calafell, Soraya Benhamamouch, David Comas, Manfred Kayser.

http://doi.org/10.1371/journal.pone.0138453

Abstract

The demographic history of human populations in North Africa has been characterized by complex processes of admixture and isolation that have modeled its current gene pool. Diverse genetic ancestral components with different origins (autochthonous, European, Middle Eastern, and sub-Saharan) and genetic heterogeneity in the region have been described. In this complex genetic landscape, Algeria, the largest country in Africa, has been poorly covered, with most of the studies using a single Algerian sample. In order to evaluate the genetic heterogeneity of Algeria, Y-chromosome, mtDNA and autosomal genome-wide makers have been analyzed in several Berber- and Arab-speaking groups. Our results show that the genetic heterogeneity found in Algeria is not correlated with geography or linguistics, challenging the idea of Berber groups being genetically isolated and Arab groups open to gene flow. In addition, we have found that external sources of gene flow into North Africa have been carried more often by females than males, while the North African autochthonous component is more frequent in paternally transmitted genome regions. Our results highlight the different demographic history revealed by different markers and urge to be cautious when deriving general conclusions from partial genomic information or from single samples as representatives of the total population of a region.

Partial Text

The human history of North Africa has been shown to be a complex demographic process characterized by multiple migrations, admixtures and founder effects. It has been suggested that the first occupation of the area by modern humans, attested by the Aterian culture, might be dated back to ~160,000 years ago [1]; and posterior cultures have been imposed in the region during pre-Holocene and Holocene times [2]. Despite the long-standing presence of human cultures in the region, it has been suggested that the present-day populations in North Africa are the result of a recent back-to-Africa migration in pre-Holocene times that replaced the first inhabitants in the region, followed by multiple migrations from neighboring areas [3]. One of the most relevant human groups in the area are Berbers who are supposed to be the descendants of this first migration back-to-Africa from the Middle East; however, the dynamics of human groups living in that area is still unclear. Historical events testify of many invasions, conquests and migrations by Phoenicians, Romans, Vandals, Byzantines, Jews, Spanish, and French [4], as well as the presence of autochthonous groups such as the Libyans, Moors, Gaetuli, and Numidians, among others. However, the most important event was the Arab conquest that begun during the 7th century, when North-African autochthonous Berber populations were converted to Islam and since then Arabic has became official language employed in the region. This fact influenced the geographical distribution of Berber communities, which are nowadays relegated to peripheral and relict areas in a vast region extending from Mauritania to Egypt and from the Sahara desert to the Algerian and Moroccan Atlas mountainous areas [5]. Nomadism is one of the factors that have contributed to the geographic isolation of these Berber populations, which became slightly different in their dialect languages and cultures. Therefore, the North African population represents a mosaic of peoples at different levels: the spoken language, the culture and even the social organization that shows in the split observed between the urban regions representatives of the elite (Romanized and Arabicized populations, for example) and the Berber populations living in the rural areas.

Our results of uniparental and autosomal markers in Algeria agree with the presence of ancestral components previously described in North Africa, attesting the genome complexity of Algerians (S8 Table). Concerning the Y-chromosome data, the highest frequencies are seen for the autochthonous North African lineages E-M81 and E-M78, this last one more frequent in Northeastern Africa where it has probably emerged [39]; whereas the presence of the Middle Eastern Y-chromosome J1-M267 has been attributed to the Islamic expansion [40]. In a similar way, the mitochondrial DNA analysis shows also different lineages in Algeria, already observed in North Africa: the North African lineages U6 and M1 that have been dated to Paleolithic times [41–43], the Eurasian H (related to the Neolithic expansion) and HV [29,44,45]; and the sub-Saharan lineages (L). It has been suggested that the sub-Saharan lineages for both mtDNA and Y-chromosome reached very recently North Africa through the slave trade routes across the Sahara [16,46,47]. Moreover, the autosomal genome-wide SNPs analysis also demonstrates the admixture of the Eurasian and African components in both Berber (Mozabite and Zenata) and non-Berber populations from Algeria in agreement with the general genetic North African landscape [3].

 

Source:

http://doi.org/10.1371/journal.pone.0138453

 

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