Research Article: The NIH-NIAID Schistosomiasis Resource Center at the Biomedical Research Institute: Molecular Redux

Date Published: October 20, 2016

Publisher: Public Library of Science

Author(s): James J. Cody, Wannaporn Ittiprasert, André N. Miller, Lucie Henein, Margaret M. Mentink-Kane, Michael H. Hsieh, Jennifer Keiser. http://doi.org/10.1371/journal.pntd.0005022

Abstract: Schistosomiasis remains a health burden in many parts of the world. The complex life cycle of Schistosoma parasites and the economic and societal conditions present in endemic areas make the prospect of eradication unlikely in the foreseeable future. Continued and vigorous research efforts must therefore be directed at this disease, particularly since only a single World Health Organization (WHO)-approved drug is available for treatment. The National Institutes of Health (NIH)–National Institute of Allergy and Infectious Diseases (NIAID) Schistosomiasis Resource Center (SRC) at the Biomedical Research Institute provides investigators with the critical raw materials needed to carry out this important research. The SRC makes available, free of charge (including international shipping costs), not only infected host organisms but also a wide array of molecular reagents derived from all life stages of each of the three main human schistosome parasites. As the field of schistosomiasis research rapidly advances, it is likely to become increasingly reliant on omics, transgenics, epigenetics, and microbiome-related research approaches. The SRC has and will continue to monitor and contribute to advances in the field in order to support these research efforts with an expanding array of molecular reagents. In addition to providing investigators with source materials, the SRC has expanded its educational mission by offering a molecular techniques training course and has recently organized an international schistosomiasis-focused meeting. This review provides an overview of the materials and services that are available at the SRC for schistosomiasis researchers, with a focus on updates that have occurred since the original overview in 2008.

Partial Text: Schistosomes are parasitic trematodes that cause significant liver, intestinal, and pelvic organ disease in millions of people living in tropical regions of the world. Infected snails residing in freshwater (e.g., rivers, streams, and lakes) transmit the parasites to mammalian hosts. Human activities conducted within snail-infested waters, e.g., bathing, recreation, and labor, result in schistosome exposure. Despite decades of environmental control measures as well as mass drug administration with antihelminthic drugs, schistosomiasis remains endemic in many regions of sub-Saharan Africa, Brazil, China, and the Philippines. Furthermore, a recent report describing 11 patients with Schistosoma haematobium infection acquired in Corsica, France, represents the first schistosomiasis cases in Europe in over 50 years [1]. Praziquantel remains the only drug that is approved by the World Health Organization (WHO) for the treatment of schistosomiasis, and therefore, the possible emergence of praziquantel-resistant Schistosoma species needs to be considered. All of these factors illustrate the urgent need for continued basic and applied research in schistosomiasis, including malacology, parasitology, and drug and vaccine development efforts. Fortunately, the molecular age of schistosomiasis research is well underway. Molecular tools to investigate all stages of the Schistosoma life cycle will be critical to usher in better diagnostics and novel antihelminthic drug and vaccine candidates.

The SRC represents the core business operation of BRI, which is a 501(c) nonprofit research institute dedicated to researching neglected tropical diseases, particularly schistosomiasis. BRI houses three divisions: a biological sample repository, a research and development laboratory, and the SRC. BRI was originally organized in Illinois as the American Foundation for Biological Research in 1948 with a focus on cryobiology, before moving to Rockville, Maryland, in 1968 and assuming its current name and research focus. In 1995, BRI received its first award from NIH-NIAID to maintain schistosome life cycles for the distribution of reagents to other investigators in the field. Prior to the award of this contract to BRI, NIAID had funded a contract for schistosomiasis reagent production at other institutions for decades. The purpose of these awards was to provide investigators with a renewable and well-characterized source of standardized reagents for schistosomiasis research. The first such award was won by the University of Michigan in 1967, at which Dr. Yung-san Liang completed his training in schistosomiasis. In 1977, the contract was awarded to the University of Massachusetts (U. Mass.) at Lowell, where Dr. Liang continued his research. In parallel, BRI had an active schistosomiasis laboratory headed by Dr. Margaret Stirewalt and had been maintaining an S. mansoni life cycle to supply research reagents to investigators at NIH. Dr. Stirewalt trained a number of current leaders in schistosomiasis research, including Dr. Fred Lewis, who initially joined BRI as one of her postdoctoral fellows. Years later, Dr. Lewis took over BRI’s schistosomiasis laboratory upon the retirement of Dr. Stirewalt. Under his direction, BRI was first awarded a schistosomiasis contract in 1995, laying the foundation of the current SRC, and has successfully recompeted for the contract in 2002 and 2009 (the current award). With that initial award, Dr. Liang was recruited from U. Mass. at Lowell, bringing with him stocks of S. japonicum and S. haematobium to establish life cycles for these two species and thus expand BRI’s capabilities to include all three major human schistosomes. Dr. Lewis also recruited Dr. Mathilde (Matty) Knight, who established a molecular biology laboratory at BRI. In the course of her research, Dr. Knight initially provided select molecular reagents for other schistosomiasis investigators upon request using surplus life cycle materials. However, she recognized that the need existed for a centralized source of well-characterized molecular reagents (of known concentration, purity, restriction enzyme patterns, etc.) and that this would be a logical extension of BRI’s existing life cycle production work. With this goal in mind, the contract was amended in 2010 to include funding for production of molecular reagents, and thus, the molecular reagent production facility was consolidated with the existing life cycle facility then known as the Schistosome Related Reagent Repository (SR3). Items were initially distributed directly from the SR3 before the formation of the current partnership with the Biodefense and Emerging Infections Resources program (BEI Resources, http://www.beiresources.org/) in 2011. The NIH established BEI as a central processing entity that allows laboratories to request materials from several NIH-funded resource centers, including those for schistosomiasis and malaria research (Fig 1). In 2014, the SR3 was rebranded as the Schistosomiasis Resource Center (SRC) to reflect the fact that BEI now served as the repository of molecular reagents and to more accurately encompass the SRC’s additional activities in education and outreach.

Many of the schistosome-specific molecular tools can be obtained free of charge by scientists through the SRC. This benefit was made possible because, as detailed above, long before the molecular era of schistosomiasis research, the NIH-NIAID had the foresight to establish a resource from which investigators could obtain various schistosome life stages without having to expend the effort and funds necessary to maintain Schistosoma spp. life cycles on their own. Since 2003, the SRC has served as a central facility for the collection and long-term storage of schistosome and host molecular reagents. At the time of the Lewis et al. publication in 2008, the SRC molecular product collection, assembled with critical guidance by Dr. Knight, consisted of complementary DNA (cDNA) libraries for S. mansoni and a few reagents (primarily cDNAs) for Biomphalaria glabrata. It was anticipated at the time that an expanded range of reagents (cDNA libraries, primers, plasmid DNAs, etc.) would become available for additional species, and this goal has been fulfilled (Fig 2). These reagents have been duplicated and deposited at BEI for distribution, free of charge, to the scientific community.

Because of the importance of the SRC’s mission, investigators at an array of institutions and organizations are eligible to receive materials: academic, nonprofit, industry, and government (local and national, worldwide). Investigators wishing to obtain SRC-generated schistosomiasis research reagents are referred to the BEI website (www.beiresources.org/). Here, prospective users must first register as a Biosafety Level 1 or 2 registrant, depending upon the materials they intend to use. BEI provides forms that can be downloaded directly from the website (S1 File). These forms allow the registrant to submit the following information: Registrant Application, Material Transfer Agreement, Biographical Sketch, and Biosafety Level 2 checklist for the facility that will be receiving the material. Upon receipt of all required forms, BEI will inform the registrant that his or her application is complete, and she or he will have the opportunity to create a profile for logging in to the website. The new user can then refer to the BEI catalog for a complete listing of all available reagents, each of which are assigned a catalog number. Available items can be browsed by resource/disease area, depositor (such as the SR3), or organism. Users can also search by specific catalog number (if known) or key words. Each item has a product sheet (describing the material, its origin, and the methods used for its production) and a certificate of analysis with lot-specific information such as concentration and purity. The user can then add an item or items of interest to his or her online cart, review the order, and submit it as with any typical vendor.

To promote schistosomiasis research, we wish to direct the reader to molecular resources outside of our center that are nonetheless valuable and potentially complementary to SRC reagents. A comprehensive resource for genomic information on a wide variety of nematode and platyhelminth species, including seven Schistosoma species, can be found at WormBase ParaSite (http://parasite.wormbase.org/). An updated version of the Schistosoma genome database (SchistoDB) is available via http://SchistoDB.net. This integrated website provides the latest genomic sequence and annotation data for S. haematobium, S. japonicum, and S. mansoni [3]. Since the publication of our original SRC overview in 2008, the ensuing years have seen the publication of the genomes for all three major human schistosome species [4–6], with additional genomic and transcriptomic data for S. mansoni in particular [7]. The subsequent publication of a genomic linkage map for S. mansoni, the first for a helminth species [8], has allowed for further research probing the basis of drug (oxamniquine) resistance by classical linkage mapping techniques [9] and by more efficient methods such as exome capture and extreme quantitative trait locus analysis [10]. Host tissue transcriptomes have been characterized for the mouse bladder following S. haematobium egg exposure as well as for the liver and spleen following S. japonicum infection [11–15]. Next-generation sequencing (NGS) has been utilized to identify genes under selective pressure in S. mansoni and has aided in the search for new molluscicide formulations against Oncomelania hupensis [16,17]. Furthermore, since the first report of particle bombardment to transfect adult worms [18], other groups have continued to advance schistosome transgenics: in 2012, Rinaldi et al. described germline transmission of a transgene introduced into parasite eggs via murine leukemia virus [19,20]. The understanding of epigenetic regulation in lower organisms is advancing as molecular tools become available to examine invertebrate epigenetics including B. glabrata and Schistosoma [21,22]. Clinical studies have shown that modification of the host genome occurs following infection with S. haematobium [23–25], and deeper studies are much needed in this area. Similarly, the influence of the microbiome (both host and parasite) on schistosomiasis infection is only beginning to be explored. Recent studies have demonstrated that infection with the liver fluke Opisthorchis viverrini alters the makeup and distribution of the microbiome in an animal model [26] and that differences exist in the fecal microbiome of humans infected versus uninfected with S. haematobium [27]. Another recent report characterized the microbiome of B. glabrata [28]. Thus, schistosome-related omics research is thriving, which will drive continued and expanded need for SRC reagents.

In addition to supplying a variety of reagents to the community, in 2012 the SRC began offering a hands-on annual course to introduce students, postdoctoral fellows, and investigators to fundamental molecular techniques that are useful for schistosomiasis research. This course is offered in addition to the ongoing training courses dedicated to the schistosome life cycle and thus represents an expansion of the SRC’s educational mission. For both courses, enrollment is capped (at 5–6 for the molecular course or up to 10 for the life cycle) in order to maximize the ability of students to interact closely with SRC staff and invited speakers. Applications are not required, but attendees must notify the SRC of their intent to attend so that a position can be reserved. Courses are typically organized in the spring (life cycle) and fall (life cycle and molecular), with the exact dates being announced 2–3 months prior on the BRI website. Announcements are also distributed directly to the SRC client list via email. For both courses, the rosters have included a mix of individuals at all academic levels: graduate students, technicians, postdoctoral fellows, scientists, and senior investigators. Sample course outlines for both the life cycle and the molecular course are included as a supplemental file (S2 File). The new molecular course is offered free of charge to the research community and features important techniques such as gene knockdown in snails and schistosome parasites by double-stranded RNA (dsRNA) (synthesized in-house) and miRNA. The course has also taught attendees polyethylenimine-based techniques for transfection of target cells and organisms with dsRNA, reporter miRNA, and plasmid vectors. This topic in particular illustrates the immediate success of the molecular course. Attendees from the 2012 course, Shuang Liang and Emmitt Jolly, published a manuscript based on the techniques developed in the class [29]. While some general techniques have recurred in multiple courses, the overall focus varies from year to year as the SRC seeks to offer cutting-edge topics that track the current interests of the field. In 2015, the course theme was the epigenetics of the intermediate host snail. These courses are valuable beyond generating publications, since insights are shared regarding which molecular reagents work best with invertebrate starting material. Lectures are given by SRC staff and invited external speakers and cover a range of relevant topics, including miRNA gene regulation mechanisms, DNA methylation, and schistosome-specific bioinformatics. Hands-on laboratory exercises have involved nucleic acid purification and quality assurance, cDNA synthesis, gene transfection, gene transcription quantification, and measurement of DNA methylation in schistosome parasites and/or snails. Finally, the SRC-BRI website offers a comprehensive array of standard operating procedures for parasite and host species maintenance and molecular protocols that are a valuable resource for the schistosomiasis research community (www.afbr-bri.com/schistosomiasis/standard-operating-procedures/).

The SRC will continue to track and contribute to developments in the field of schistosomiasis and in infectious disease research in general, in order to meet the changing needs of the research community and expand the scope of the reagents offered, with a recent emphasis on molecular reagents. In fact, the SRC at BRI has taken a leading role in fostering advances in schistosomiasis research. In 2016, BRI and the George Washington University (Washington, D.C.) collaborated to sponsor an international meeting intended as one of the first of its kind that will focus solely on schistosomiasis research: the Symposium for International Research and Innovations in Schistosomiasis (SIRIS). The 2016 meeting, “Defining the Global Impact of Schistosomiasis,” brought together 70 attendees. Experts from a variety of academic, industry, and private organizations presented their latest findings, ranging from an epidemiological level to a molecular level, on topics including the effectiveness of current therapeutic strategies, mass drug administration efforts, parasite biology, vaccines, omics, and disease pathology. Given the overwhelmingly positive feedback gathered from attendees, this event promises to become a key forum for the exchange of ideas in the schistosomiasis research community for years to come. Through efforts such as these, the SRC at BRI will continue to fulfill its mission of enabling the research community to combat schistosomiasis.

Source:

http://doi.org/10.1371/journal.pntd.0005022