Research Article: Unlocking a high bacterial diversity in the coralloid root microbiome from the cycad genus Dioon

Date Published: February 6, 2019

Publisher: Public Library of Science

Author(s): Pablo de Jesús Suárez-Moo, Andrew P. Vovides, M. Patrick Griffith, Francisco Barona-Gómez, Angélica Cibrián-Jaramillo, Sabrina Sarrocco.


Cycads are among the few plants that have developed specialized roots to host nitrogen-fixing bacteria. We describe the bacterial diversity of the coralloid roots from seven Dioon species and their surrounding rhizosphere and soil. Using 16S rRNA gene amplicon sequencing, we found that all coralloid roots are inhabited by a broad diversity of bacterial groups, including cyanobacteria and Rhizobiales among the most abundant groups. The diversity and composition of the endophytes are similar in the six Mexican species of Dioon that we evaluated, suggesting a recent divergence of Dioon populations and/or similar plant-driven restrictions in maintaining the coralloid root microbiome. Botanical garden samples and natural populations have a similar taxonomic composition, although the beta diversity differed between these populations. The rhizosphere surrounding the coralloid root serves as a reservoir and source of mostly diazotroph and plant growth-promoting groups that colonize the coralloid endosphere. In the case of cyanobacteria, the endosphere is enriched with Nostoc spp and Calothrix spp that are closely related to previously reported symbiont genera in cycads and other early divergent plants. The data reported here provide an in-depth taxonomic characterization of the bacterial community associated with coralloid root microbiome. The functional aspects of the endophytes, their biological interactions, and their evolutionary history are the next research step in this recently discovered diversity within the cycad coralloid root microbiome.

Partial Text

Specialized root modifications that contain endophytic microbes are rare in plant evolution, present in some legumes [1] and few other groups in angiosperms and in cycads in the gymnosperms [2]. Cycads have specialized apogeotropic roots of small coral-like shapes, termed coralloid roots, which contain nitrogen-fixing cyanobacteria. The formation of a coralloid develops from the secondary roots through morphological changes that include an increase in lenticel cells [3], considered the main mode of cyanobacterial entry [3,4]. Coralloid masses are formed involving somatic reduction before the dichotomous branching of the roots. The reduced cells make up part of a ring of differentiated cortical cells lying beneath the epidermis [5]. It is possible to see this ‘cyanobacterial ring’, also known as ‘algal ring’, inside which endophytes are located, even with the naked eye.




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